PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494687.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 557aa    MW: 63668.8 Da    PI: 7.0376
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.63.7e-1488148266
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     Wt++e laL ++r+ +++++ ++      W++vs+k++e gf++s+++Ckek+e+ n+ y k  +
  XP_004494687.1  88 WTDEELLALFNIRSTIHNSFPDQ----LTWDHVSRKLAELGFKKSAEKCKEKFEDENRSYFKNID 148
                     ********************998....99*****************************9988766 PP

2trihelix864.5e-27396492185
        trihelix   1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     rW+++evlaLi+++            + +++ +++  k+plWe++s+ m e g++r++k+Ckekwen+nk+++k+k+  +k+ +s +s+tcpyf+
  XP_004494687.1 396 RWPRDEVLALINLKCissnnnnnveeKEGNNNNNNDNKGPLWERISQGMLELGYKRNAKRCKEKWENINKYFRKTKDVVSKKkRSLDSRTCPYFH 490
                     8************997777777655333333334569****************************************9888757*********** PP

        trihelix  84 ql 85 
                     ql
  XP_004494687.1 491 QL 492
                     *9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.684142IPR001005SANT/Myb domain
PROSITE profilePS500905.85486140IPR017877Myb-like domain
PfamPF138372.0E-1087148No hitNo description
PROSITE profilePS500906.168389464IPR017877Myb-like domain
SMARTSM007171.2393466IPR001005SANT/Myb domain
PfamPF138375.8E-16395492No hitNo description
CDDcd122031.28E-19395471No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLSRVGGGNS KVGKMLDGEA EEEYDSNLSV QYSISSSNNH ITFNPSTISH SHHQYQFLPH  60
LQTNLFPQIQ TQPPPPPPPP FIHSASAWTD EELLALFNIR STIHNSFPDQ LTWDHVSRKL  120
AELGFKKSAE KCKEKFEDEN RSYFKNIDSY RFVSELQGLY DQCHDDHGDV VTKDENSKDI  180
VMTKQCGDDD DDEKVILEKS KEIRKRKRRD RFEMFKCFCE SVVNNMMSQQ EQIHNKLLED  240
ILKRDEEKVA KEEAWKKQEM ERMNKELDIM AQEQAIANDR QANIIQFFNK YLNGNNKSSK  300
GCSSSSPSPP TQLHSQNPNY DLPSTRNNNN LESSTTPCSN SNIMIEENPS SSDNVVVVVP  360
LQQVPSSSSN NNNNPILESN STSTLVDSRM EDIKRRWPRD EVLALINLKC ISSNNNNNVE  420
EKEGNNNNNN DNKGPLWERI SQGMLELGYK RNAKRCKEKW ENINKYFRKT KDVVSKKKRS  480
LDSRTCPYFH QLSCLYNKQQ EKQGGGKLIS LHPNINSAHQ SSDSPVASGG MNNGCQPAQP  540
PVPSKDFPRN ISTFDRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2531302e-33KT253130.1 Chrysanthemum x morifolium trihelix protein (TH20) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494687.10.0PREDICTED: trihelix transcription factor GTL2-like
RefseqXP_012569648.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLV7BQ631e-143V7BQ63_PHAVU; Uncharacterized protein
STRINGGLYMA19G43280.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-34Trihelix family protein